| Time | Title | Speaker/Chair |
|---|---|---|
| 9:00am – 9:10am | Opening remarks | Meghan Driscoll |
| 9:10am – 10:40am | Session I | Chair: Meghan Driscoll |
| 9:10am – 9:50am | Invited Talk 1: Cross-Modal Learning in Cellular Biology: From Transcriptome to Cell Morphology and Back | Maria Brbic |
| 9:50am – 10:10am | Contributed Talk 1: An Investigation of Unsupervised Cell Tracking and Interactive Fine-Tuning | Manan Lalit |
| 10:10am – 10:40am | Contributed Talk 2: SelfAdapt: Unsupervised Domain Adaptation of Cell Segmentation Models | Fabian Hubert Reith |
| 10:40am – 11:00am | Coffee Break | |
| 11:00am – 12:20pm | Session II | Chair: Lorenz Rumberger |
| 11:00am – 11:40am | Invited Talk 2: Representation learning and generative models for phenotypic drug discovery | Auguste Genovesio |
| 11:40am – 12:00pm | Contributed Talk 3: A comparison of data-driven shape quantification methods for 2D microscopy images | Anna Foix Romero |
| 12:00pm – 12:20pm | Contributed Talk 4: SynapFlow: A Modular Framework Towards Large-Scale Analysis of Dendritic Spines | Pamela Osuna-Vargas |
| 12:20pm – 12:30pm | Poster flash talks (1/2): “From Natural to Nanoscale: Training ControlNet on Scarce FIB-SEM Data for Augmenting Semantic Segmentation Data” and “NeuReg: Domain-Invariant Brain Registration Across Species and Modalities” |
Hannah Kniesel and Asim Iqbal |
| 12:30pm – 1:30pm | Lunch | |
| 1:30pm – 3:00pm | Session III | Chair: Anna Foix Romero |
| 1:30pm – 2:10pm | Invited Talk 3: Geometry for cells: Analyzing microscopy images from the cell’s point of view | Meghan Driscoll |
| 2:10pm – 2:30pm | Contributed Talk 3: Preserving instance continuity and length in segmentation through connectivity-aware loss computation | Karol Szustakowski |
| 2:30pm – 2:50pm | Contributed Talk 4: Topology-Preserving Image Segmentation with Spatial-Aware Persistent Feature Matching | Bo Wen |
| 2:50pm – 3:00pm | Poster flash talks (2/2): “Probabilistic Domain Adaptation for Biomedical Image Segmentation” and “cubic: CUDA-accelerated 3D Bioimage Computing” |
Anwai Archit and Alexandr A. Kalinin |
| 3:00pm – 4:50pm | Poster session | |
| 4:50pm – 5:00pm | Concluding remarks | Lorenz Rumberger & Anna Foix Romero |
| 5:00pm | End of the workshop |